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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Petra Byl
Petra is an affiliate researcher who cultivates marine algae infected by giant viruses from subtropical, oligotrophic …
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David Goodstein
With a background in experimental and computational surface physics, Dr. … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … DOE Office of Science National User Facilities in a single project. … This work was supported through a USDA NIFA award …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other chemicals. … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … should indicate this in the proposal so we can select the project provisionally. If your project makes it successfully …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for three days of …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … Preliminary observations regarding the contributions of algae and viruses to the ecosystem were noted, but require … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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What Happens Underground Influences Global Nutrient Cycles
EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … and discover gene functions that may be relevant to both algae and land plants.  Within the biogeochemistry group, …
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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … values, which guide the relationships we nurture in our workplace and seek to establish with our …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences … workshops. Researchers from academia, government, and industry, are invited. Check back for more details and …
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