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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I recently caught up with …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich at the University of California, … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … The Blob reached southern California. Steven Hallam of the University of British Columbia was already collecting ocean … a former postdoctoral fellow in the Hallam lab now at the University of Southern Denmark, and colleagues at Hakai …
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How Filamentous Fungi Sense Food
… crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … fungus  N. crassa , a team led by N. Louise Glass at the University of California, Berkeley and her postdoctoral …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler at   Humboldt Universität zu Berlin …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight … and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the National Center for Biotechnology … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less …
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