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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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Triggering Morel Fruiting
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Enlarging Windows into Understanding Gene Functions
… bind quickly and efficiently in the genome by adding tagged transcription factors to a genomic DNA library. “It’s … FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes anymore, but their functional … down plant materials, which could be useful for industrial biofuel production, and multicellular development. “DAP-Seq …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… to a savory meal, while others may be useful in the biofuel and synthetic biology fields. In a living cell, …
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Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… among the major high-yield C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable …
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Doubling Down on Known Protein Families
… (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … similar to anything we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so …
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… transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of …
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