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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae
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Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … But for them to be able to pull that water through the whole plant system, they need to open these pores in their …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … address some of the most pressing challenges of our time. For more information, please visit  …
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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