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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … Release: JGI, VBI Describe Evolutionary Origin, Disease-Causing Mechanisms of Sudden Oak Death, Related Soybean …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… viruses from environmental sequences across the globe, then using these sequences to make inferences about the … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the … to mine, bin and then filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers …
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Hi-C metagenome sequencing reveals soil phage–host interactions
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Comparative analysis of carboxysome shell proteins
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Extreme-Scale Many-against-Many Protein Similarity Search
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational … data.   FY05-07 Sequencing Goals and Results Fiscal Year Sequence (GB) Operating Hours Targets Actual* Targets Actual …
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LmbE proteins from Bacillus cereus are de‐N‐acetylases with broad substrate specificity and are highly similar to proteins in Bacillus anthracis
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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