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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fungi. The work also suggests a new approach to gene annotation, which then can be explored in depth for multiple …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Plant-Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, please reach out to …
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Predicted structural proteome of Sphagnum divinum and proteome-scale annotation
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … that. JACKIE: So I guess when you get a new organism or a genome, let's say, and you're looking at clusters, is there …
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