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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks …
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Fungal diversity and function in metagenomes sequenced from extreme environments
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Insight into trade‐off between wood decay and parasitism from the genome of a fungal forest pathogen
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
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Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal Program head Igor Grigoriev , Plant & … Kyrpides , Biology & Biochemistry category Computational Genomics Lead Dan Rokhsar , Molecular Biology & Genetics …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated proteins that can … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … soil carbon. The process to harvest energy-generating peat from these boggy wetlands produces an estimated 5% of annual …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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