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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … below a pine or an oak tree, in Sweden or Quebec.  Ecologically, Martin suggests this redundancy is protective, a bit …
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Making a Lichen Together
… with the photobiont transferring part of its photosynthetically fixed carbon to the mycobiont. However, despite a … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal … the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. This work was supported by funds to …
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Genome-Based Taxonomic Classification of Bacteroidetes
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … Additionally, insights from the genome could help scale sustainable sugarcane conversion technologies for  … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   … The work (proposal: …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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