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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … in v13. However, the genomes included in PhytoMine will typically lag the full set of released genomes available in …
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Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
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You Can Move, But You Can’t Hide
… software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs based upon … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … and environmental interactions. Terpenes are also economically important because of their use in industrial … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … below a pine or an oak tree, in Sweden or Quebec.  Ecologically, Martin suggests this redundancy is protective, a bit … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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