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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … JGI and the Molecular Foundry.  Submission Deadline Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep …   Learn more about our individual calls and other opportunities to work with the JGI …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … shed light on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales … 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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A Community Resource for Secondary Metabolite Researchers
… secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … come pre-annotated using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and even more ancient … to its gene hoarding and those long genes. And gene family analysis showed that genes directing development of …
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The deuterostome context of chordate origins
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects … laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their … BS in Electrical Engineering, University of New South Wales, …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … but we can already provide raw mapping files as well as gene- and contig-level coverage. Other related products Q:  …
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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