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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … could also lead to new approaches to accelerate flowering, which can speed the pace of breeding. Once plant … sequences so that their sequences read the same (or nearly) backward and forward, like the name “Hannah.” …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … interesting zinc-mirror heme site that plays a key role in sensing iron and regulating metabolism as cyanobacteria …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Designing Synthetic Chemoreceptors for Neurotransmitter Sensing   Watch this short video below to see what some of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … She continued working virtually with her JGI mentors for nearly three years after her internship. “That level of … Patterns of Adaptive Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along … Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support …
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Statement on the Use of Genomics Data
… and reinforced by the  Fort Lauderdale Agreement (2003), the JGI recognized the need to engage the community to … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley Lab … – $250 Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – $250   Hosted by the DOE Joint …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … described his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign … us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and …
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