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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint … science including technical capabilities offered, proposal review procedures and the annual user meeting. The UEC also …
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … in depth for multiple models and their close relatives across the fungal tree of life, enriching the work being done …
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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2024 Progress Report
… 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … which attracted 276 in-person attendees with a rich agenda across our scientific programs, as well as workshops that …
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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Learning to Look
Machine learning approach significantly expands inovirus … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … virome associated with nearly all bacterial phyla across virtually every ecosystem.” By significantly expanding …
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Doubling Down on Known Protein Families
National Laboratory (Berkeley Lab), and collaborators across multiple other research centers around the world. … distinguish which gene belongs to each individual microbial species within a community. Therefore, the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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