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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … labs had people and resources focused on three human chromosomes: Lawrence Berkeley National Laboratory … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp.
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Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria
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Crysten Blaby-Haas
… a partnership between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley … Daldal F, Koch H. (2019) The  cbb 3-type cytochrome oxidase assembly factor CcoG is a widely distributed novel cupric … Google Scholar … Education … Awards and Service … Selected Publications …
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A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix
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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … One of these techniques was DAP-seq, a high-throughput method for identifying protein binding sites in DNA by DNA …
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