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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … a global analysis of the diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Facility, found that the fungus Olpidium is a link in the evolution and transition of fungi from aquatic to … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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ChIP-Seq identification of weakly conserved heart enhancers
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Novel function of the human presqualene diphosphate phosphatase as a type II phosphatidate phosphatase in phosphatidylcholine and triacylglyceride biosynthesis pathways
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … segments used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Atmospheric methane consumption in arid ecosystems acts as a reverse chimney and is accelerated by plant-methanotroph biomes
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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