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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out from previous …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … spans 15 years and involves more than 17 research groups. The team set out to characterize the transcriptome – … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … well as material that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex … Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … already familiar with the research portfolio that the JGI supports, include JGI’s emerging leadership role in a …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … with BER missions to provide the fundamental science to support innovations for bioproduction and advance their … a Laboratory-Directed Research and Development project supported by Berkeley Lab, JGI and Foundry researchers …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery … that turns scientific presumption on its head and opens up a new avenue to explore for efficient biofuel production. …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, … keen interest in the bioenergy and biotechnology potential of algae, and sampling of the length and breadth of algal …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … in general, work. KAROLINA:  We all know plants take up water through their roots. But for them to be able to …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. This study …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium … This research was supported by grants from the Simons Foundation (#329108 and … #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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