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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can … recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed significant … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … global metagenomes (within IMG).  The Impact The initial analysis highlights abundances of gene annotations that … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… faculty members may invite up to two student participants from the faculty member’s home academic institution, one of … Platform Ben Bowen and Katherine Louie for the JGI Metabolomics Platform Blake Simmons for The BioManufactory … Faculty interested in developing proposals with JGI and Biosciences Area researchers should contact David Gilbert …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Statement on the Use of Genomics Data
… advancing the field of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to be moved to private status. This will remove records from search indexes and BLAST databases until such time that … working to address some of the most pressing challenges of our time. For more information, please visit  …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… published in  The Proceedings of the National Academy of Sciences bridges this gap, by tracing the evolution of a … across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, … bacteria, archaea and fungi. We thought this kind of analysis would provide a framework for the evolution of this …
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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DAS Tool for Genome Reconstruction from Metagenomes
… approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity … ETOP mission of providing JGI users with the most current technology and expertise in order to address pressing energy … with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest that extracting …
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Webinar: MycoCosm Tutorial
… for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us for … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Meeting Code of Conduct
… participants are expected to be familiar with this policy. Our aim in hosting an event is to build a stronger community. Our goal is to create an environment where everyone feels … Participants violating these rules may be expelled from the event at the discretion of the event staff. …
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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