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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Katherine Louie
Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics …
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User Executive Committee Charter
JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … feedback and make recommendations on how the JGI Science Programs can best support the user community. Advise the JGI …
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How to Target a Microbial Needle within a Community Haystack
… sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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A Step Toward Controlling Soybean Rust
… percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of … Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop … working to address some of the most pressing challenges of our time. For more information, please visit  …
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From Competition to Cooperation
… the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also … of mutualistic forest-dwelling fungi … Datasets … From our partners …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Cultivating Symbiotic Antarctic Microbes
… biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US … host dependency of Antarctic Nanohaloarchaeota   … From our partners …
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Pinning Down a Piece of Photosynthesis
National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s … experiments, so researchers have studied the blueprint plans that give rise to the protein parts of that machine — … In a project led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … This is also the type of synergistic and collaborative community spirit that the JGI advocates for and actively … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Tracing the Evolution of Shiitake Mushrooms
… mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Operating Expenses
Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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