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How to Target a Microbial Needle within a Community Haystack
… sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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Uncovering Novel Genomes from Earth’s Microbiomes
… environmental samples  sequenced by the JGI through the  Community Science Program and was already available on the … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … This is also the type of synergistic and collaborative community spirit that the JGI advocates for and actively … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …
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Operating Expenses
Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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Tracing the Evolution of Shiitake Mushrooms
… mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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John Vogel
… joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular … driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal …
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JGI@25: Strengthening Soybean
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … been cited more than 5,400 times, including a number of projects that point to the potential of seed oils as … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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10 From JGI on the 2019 Highly Cited Researchers List
… , Biology & Biochemistry category Some highlights from projects each of these researchers were involved in that … last year: Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a … for an uncultivated virus genome, including the source, methods of identification of the virus genome, and …
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How Filamentous Fungi Sense Food
… importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the … a Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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