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… of this field, the JGI has leveraged metagenomics to boost understanding of environmental viruses. In 2016, Nikos … have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from … all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral …

… associated genes are great resources for bioremediation, new agricultural applications or life-saving drugs. A better … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern … they can change position within a genome — into certain DNA segments has led the fern to its gene hoarding and those …

… Jan. 7: New Capabilities to Study Secondary Metabolism   Although … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science …

… of invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has advanced their work on the … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …

… Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … Methods paper coauthor Lee did the initial development of a streamlined workflow that reduces the time and cost … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …

… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … user community inputs. We also have the potential to create new EcoGroups – reach out to us. 3.  Q: Can you use NCBI … genomes 17.  Q: How do we find the parameters, values and softwares/packages used by JGI to create these syntenic …

… recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating … compounds to link active microbes with specific metabolic processes. A third approach steps away from reconstructing …

… Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went on to … time (1986) 98% of the human genome was thought to be junk DNA, so there was quite a bit of resistance to use resources …

… such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free tool … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …

… Miscanthus  sequence offers insights into benefits of polyploidy and … genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … of rapidly growing plants whose biomass can be renewably converted into energy or biofuels. Although a member …

… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of … of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …