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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species
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The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi … have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are likely to …
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Industry Engagement Program
… accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and … Science Program, the JGI sequenced and characterized 270 genomes of the Clostridium genus for LanzaTech, information …
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Examples: Successful LOIs & Submissions
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple … environments such as poor soils and drought. The reference genome for M. sinensis, and the associated genomic tools, …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to offer researchers high-powered tools for large-scale assembly and analysis.   To put these efforts into … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider …
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