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At the Forefront of Terrestrial Virus Research
Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities at DOE laboratories.   …
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New Research Sheds Light on Diversity in the Deep Sea
… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … conditions. At these vents, and underwater volcanoes,  researchers studied microbial communities across five … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Partnerships: Myco-Ed
… fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … user interface is designed for use by mycologists and researchers, facilitating the transition from genomic …
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DOE JGI Metagenome Workflow
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered … were lost in other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  … of harmful chemicals found in pesticides and refrigerants. Researchers found a number of surprising traits in  …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly collaborated with each other on …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
Júnia Schultz is currently a postdoctoral fellow at the Biological and Environmental Sciences …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … group, will assemble input materials, with eight or nine different teams then performing analyses that they will …
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … Nature Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in fungi.  Nature …
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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage
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A framework for human microbiome research
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