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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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Rex Malmstrom
… the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable Isotope Probing …
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TRIMER: Transcription Regulation Integrated with Metabolic Regulation
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Triggering Morel Fruiting
… revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant … litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying … cellulose were rapidly degraded by a set of significantly upregulated glycoside hydrolases, while triglycerides were …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Natural Prodcast Episode 16: Marcy Balunas
… activity. So the chemistry and function really of those microbes that live there.  And in our work we’ve determined … bobtail squid, it’s doing some sort of interaction with its microbes that it’s getting.  But yet the organisms are … experience is great for helping the chemistry to be upregulated or to produce chemistry.  DAN: How would you try …
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Marine microbial community responses related to wetland carbon mobilization in the coastal zone
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Adapted laboratory evolution of Thermotoga sp. strain RQ7 under carbon starvation
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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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