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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these … State University and colleagues aim to understand how soil microbiomes in fire-adapted ecosystems respond to low and …
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Community Science Program
… Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under … The ranked proposal list, along with a recommendation from JGI management, is then forwarded to DOE for final …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team …
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Gene Expression: From On-Off Switch to Dial
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational … data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the …
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Work With the JGI! Tips for a Winning CSP Proposal
… open to scientists at any career stage, anywhere in the world, for free. We accept new projects related to energy … up – in January, March, and later on in the spring. In this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new …
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Making a Lichen Together
… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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