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DOE JGI Interns Share Their Summer Experiences
… here to check out photos of the interns. For this second year of the DOE JGI/University of California, Merced …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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JGI Announces 2025 New Investigator Portfolio
… Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs … alpine soils to tropical glaciers.  Proposals are accepted year-round for this ongoing call; the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November 2025 review. You can …
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Forming Scientific Connections and Building Community
… interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … – were selected to continue their research over the school year.   …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Dealing with Drought: Uncovering Sorghum’s Secrets
… For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering … Control of Drought Response in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of … impact the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale …
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Game On: High School Students Drive Everglades Metagenomics Study
… of 2018, Jonathan Benskin was preparing to teach a second year A-Level Advanced International Certificate of Education … answers being, “It would take a team of Ph.D.’s over a year to do a project at this capacity.” Jonathan’s thought … Education (E4) community-building workshop at the  2019 Association for Environmental Studies and Sciences (AESS) …
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JGI Announces 2026 New Investigator Portfolio
… Wilken, Jing Yuan, and Brittany N. Zepernick.    Each year, the JGI solicits novel research projects from PIs who … crop resilience and soil health. Proposals are accepted year-round for this ongoing call; the next deadline for …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing Integrated Microbial … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 … inform on how this can be done” Roux said. And in just 6 years, IMG/VR has built a foundation for finding more of …
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Taking Stock of the Known and Unknown Microbial Space
… biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, Seshadri, … the team found that bacterial isolate genomes represent 9.73% of the total estimated diversity of the available … data directly from environmental samples over the years have significantly expanded the known diversity of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — … borders the University of Wisconsin-Madison, for over 20 years in order to better understand how the freshwater …
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Boosting Small Molecule Production in Super “Soup”
… of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the carbon in the … Though such visits have been impossible for the past year and a half, “the logistics haven’t changed,” noted … of product formation.” This was the first time CRISPR-Cas9 had been used to modify a cell’s genome in order to create …
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