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Trent Northen
… starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
Q:  To what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during … in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will include a … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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Crysten Blaby-Haas
… the heme-binding split-barrel family. J Biol Chem  300(11), 107888. Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy … Niyogi KK, Schmutz J, Theg SM, Blaby-Haas CE, Merchant SS. (2021) Widespread polycistronic gene expression in green … PNAS  118 (7) e2017714118 Foflonker F and Blaby-Haas CE. (2021) Co-locality to co-functionality: Eukaryotic gene …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … data obtained from environmental samples — to identify over 27,000 microbial genes. These genes were identified …
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Secondary Metabolites Program
DNA synthesis and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded …
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iPHoP: A Matchmaker for Phages and their Hosts
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … Cole led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. Former …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Control of Drought Response in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of … impact the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale … site and then collect and process the samples starting at 10am Pacific time. JGI researchers helped develop the …
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The International Virus Bioinformatics Meeting 2020
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … Cole led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. Former …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo … precise genome editing. This means that scientists can modify gene expression, or delete genes, all with the rapid …
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