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2022 Progress Report
Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory (Berkeley Lab), is to become …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), generated … for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene that way,” said Kellogg, a senior … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on …
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Numerous cultivated and uncultivated viruses encode ribosomal proteins
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … cells. This demonstration of the virus-host arms race in uncultivated yet abundant subsurface organisms was  recently … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). To learn more …
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study … laborious process — as well as a key way scientists study microorganisms. Because microorganisms live in complex … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have developed a …
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Finding the Fermenters
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the DOE … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage these fungi wield: the capacity to …
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JGI Launches Latest Strategic Plan
… new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with the big move from leased space in … scores of individuals, including JGI staff, Biosciences and Berkeley Lab leadership, the half-dozen JGI advisory … document widely within the Biosciences Area and among our Berkeley Lab colleagues, particularly with the other user …
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
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