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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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Scaling Up Existing Skill Sets
… and insights on the project and everyone’s willingness to guide or mentor me during my internship.             Name: … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my …
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Natural Prodcast Episode 5: Brad Moore
… before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … air, email us at [email protected] .  And because we’re a User Facility, if you’re interested in partnering with us, …
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JGI@25: Using Team Science to Build Communities Around Data
… genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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New Lineages of Life Group
… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, Synthesis …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Prepublication data sharing
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Clustering Categorical Data
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Simon Roux
… include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts …
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Protein structure determination using metagenome sequence data
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