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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Matt Blow
… resequencing, transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … … and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training … regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available …
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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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JGI Scientists Pen Genome Watch Articles
Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … the human genome. Today, the Sanger Institute focuses on genomics to understand human and pathogen biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: …
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Alabama A&M Interns Access An Abundance of Knowledge
Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … with a grass plant that’s similar to wheat and rice called Brachypodium distachyon. LaMonika Dent : We have been … experience in molecular biology and plant functional genomics, because this work is essential for improving crop …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and … across Earth’s biomes. Nature 4:1895-1906 Sberro H. et al. 2019 Large-Scale Analyses of Human Microbiomes Reveal …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. …
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Natural Prodcast Episode 17: Cassandra Quave
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The JGI announces 2024 awardees for our Community Science Program annual call
… “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … and I look forward to seeing their outcomes.” The annual CSP call is focused on large-scale genomic science projects … calls including our New Investigator and Functional Genomics calls, here on our website . See below for the full …
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