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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … is colloquially known by researchers. A missing gene from this mutant library leads to photosynthetic defects, … expected to be expert users on all of the scientific instruments. Instead, members of the scientific staff from both …
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers
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Matthew Kellom
Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities … also supports various CSP and FICUS user projects for the Metagenome Program. …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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ClaMS: A Classifier for Metagenomic Sequences
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek … peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then installed at … Lab . “While we’re getting rid of stuff, our effort in this cleanup is not just to clean out the building.  We …
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Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
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