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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … research. “What I have told our growers is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal … processes. The team then extended their analysis beyond the reference set, using two additional approaches. To search …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Meeting Code of Conduct
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 … have cited that genome. Since publishing that original reference genome, the JGI has also continued to collaborate …
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Examples: Successful LOIs & Submissions
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then you’ll recognize this … the end, then you’ve probably heard me say that the Joint Genome Institute is a “Department of Energy user science …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … receive a lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that …
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Industry Engagement Program
… accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and … Science Program, the JGI sequenced and characterized 270 genomes of the Clostridium genus for LanzaTech, information …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are … development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal …
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JGI Mural
… 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing …
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