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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in … factory.  “These large-scale research efforts are accelerating the transition into real-world applications,” … collaborations.” A third story from the issue — Machine learning-based prediction of activity and substrate …
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Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at …
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Decoding Yellowstone’s Microbial Mats
Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two … surprises, adopted new technologies, and made a few discoveries about the microbial mat denizens.  …
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Secondary Metabolites Program
… to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential … plants. These compounds are key to organisms' interactions with their environments and with each other, from defending … of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … this be a project, we want it to be a really comprehensive learning experience.” Over the course of the year, she and …
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Behind the Paper: Hot Springs Metagenomics
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A Bioinformatician's Guide to Metagenomics
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Data Policy
… this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), … visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. … publication of the data. In short, those users not involved with the proposal under which the data were generated who …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … called Chlamydomonas reinhardtii. We’re using an attentive deep learning model called Tabnet in order to perform regression …
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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