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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as well as gaining … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in wild type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence Berkeley National … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … Laboratory had teams studying Chromosome 19, which contains about 2% of the human genome. They were interested in genes …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy … Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and mentor Juan C. Villada, Ecology …
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Operating Expenses
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & Guohong “Albert” Wu Edgar Jimenez & Sharon Greenblum … Li Lei and Virginia Scarlett Jasper Toscani Field & Brian Bushnell Lesly Lopez & Li Lei Lorenzo Scaturchio & Benjamin …
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Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils
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Substrate-restricted methanogenesis and limited volatile organic compound degradation in highly diverse and heterogeneous municipal landfill microbial communities
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, …
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