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DNA Synthesis Program
… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and …
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Graduate Students Get Thesis Research Opportunity at the JGI
… were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects … of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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Viruses Reprogram Cells into Different Virocells
… cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … Research and operated under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
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Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae
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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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Better Genome Editing for Bioenergy
… CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for … Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW were supported by the Office of …
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An Automated Tool for Assessing Virus Data Quality
… Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). …
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