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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, … Tools and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it … in ferns could not explain the massive size of most fern genomes. A team of researchers put together a chromosomal …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. … fields. A public repository of 52,515 microbial draft genomes generated from environmental samples around the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …
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Data Ecosystem
… data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Enlarging Windows into Understanding Gene Functions
… it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes anymore, but their functional interpretation …
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Help from Citrus’ Bitter, Hardier Cousin
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A Grass Model to Help Improve Giant Miscanthus
Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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Natural Prodcast Episode 22: Alison Narayan
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Examples: Successful LOIs & Submissions
… soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … Schmutz and his team assembled and annotated the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of …
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