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Learning to Look
… Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater … its demand for substantial operational resources.  ”The metagenomics data generated by the JGI are very high-quality,” …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in the …
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How Maize Makes An Antibiotic Cocktail
… Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and … Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by … Program (to KMM) and Fulbright Research Grant (E0581299; to MB).   …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … the entire cell.” The JGI team then used single cell genomics to analyze five of the bacterial cells on the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent of the … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals …
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JGI User Executive Committee Expands
… genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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