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New Research Sheds Light on Diversity in the Deep Sea
… other biomolecules that could potentially be applied to biotechnology and medicine. A more robust understanding of … communities could lead to the development of new biotechnologies around clean energy,  biofuels and … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, …
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An Automated Tool for Assessing Virus Data Quality
… data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) …
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How Filamentous Fungi Sense Food
Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other … Academy of Sciences . Researchers applied multiple omics techniques to reconstruct and model the gene regulatory … ranged from simple sugars to plant biomass. One of these techniques was DAP-seq, a high-throughput method for …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 … in a terrestrial environment with low mobility. The metagenomic data suggests that viruses don’t diffuse well …
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Fungal Friends or Foes in Plant Roots
… of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by … the Plant–Microbe Interfaces Scientific Focus Area in the Genomic Science Program, the Office of Biological and …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … helped fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific … and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was performed at …
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Supercharging SIP in the Fungal Hyphosphere
… with potential applications in industry and biotechnology for the production of  clean energy . Summary …
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Effects of Polar Light Cycle on Microbial Food Web
… collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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Gene Expression: From On-Off Switch to Dial
… that is transferable to other systems, expanding the technologies available for other JGI users outside the realm … these sugars. To demonstrate the versatility of this novel technique, Alper and his team also applied this method to a …
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The Case for Conservation
… assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact Found on all … the discovery of genes that could be used for multiple biotechnological applications. These applications include crop … Sarah Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references are …
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iPHoP: A Matchmaker for Phages and their Hosts
… hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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Cataloging the Microbes that Manage the Health of River Systems
… also funded under the RC-SFA at PNNL by DOE BER ESS. Metagenomic and metatranscriptomic sequencing was performed at … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal … under contract no. DE-AC02-05CH11231. Work conducted at the Genomics Shared Resource at the University of Colorado was …
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