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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … information has allowed the research team to associate climate adaptations with switchgrass biology, information that … to directly test for genes involved in biomass yield and climate adaptation in switchgrass, despite its physical size …
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … the structures and functions of the genes encoded in the genome sequence is part of the integrative science mission … in the project,” Nagy added. “Since the FUNCODE is primarily interested in transcription factor binding, we build …
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Eelgrass Proves to Be Much Younger Than We Thought
… in  Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously … habitats are more vulnerable to the effects of a changing climate. Knowing more about how eelgrass evolved can help … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … showed that those zinc-binding proteins are important for primary metabolism such as photosynthesis and gene … their frigid environment, Mock pointed out that as climate change warms polar waters, changes in trace metal …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to … rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.     …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … Publications …
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Doubling Down on Known Protein Families
… confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … preferred a specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … Talk Title: CRISPRology — The Science and Applications of  Genome Editing (Virtual) Jennifer Doudna is a professor at … emissions of livestock. Currently, adjusting the diet of animals can help to lower greenhouse gas emissions, however, …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … strain variation showed that haloarchaea generally have a primary replicon (chromosome) that is highly conserved and …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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