Results

JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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How Filamentous Fungi Sense Food
… enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been … predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis … protein-coding annotations in all IMG metagenomes. The work is of interest to the Department of Energy …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on … that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me and learning …
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