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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into small … that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Benjamin Cole
… … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of … of the Index of Cell Identity as an R package … Education … Selected Publications … Software …
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Extracting the Secrets of Secondary Metabolites
… in overcoming this obstacle when it hit the scene in 2019. Now, that power is poised to grow exponentially by … User Facility, is supported under contract DE-AC02- 05CH11231. …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… relative of SOD is P. infestans , responsible for the mid-19th century Irish potato famine.   Shortly before the … origins and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… led the work in collaboration with JBEI as part of the 2021 Laboratory Directed Research and Development (LDRD) … a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. Former JGI … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Community Resource for Secondary Metabolite Researchers
… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, … it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome … is already the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… for protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc … in Chemical Engineering … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Ben Bowen
… … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for … glycolysis. Oncogene, 30(48), 4765–4779. Google Scholar. … Education … Awards and Honors … Selected Publications …
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New Research Sheds Light on Diversity in the Deep Sea
… function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. … by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …
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An Automated Tool for Assessing Virus Data Quality
Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 …
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How Filamentous Fungi Sense Food
… tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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