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… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior … JGI, he spent time as a faculty member at the University of Rhode Island, as a Senior Scientist at Warp Drive Bio, …

… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the …

Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … framework provided by these high quality reference genome sequences could help researchers better understand related …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …

… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model … McGivern BB et al. Decrypting bacterial polyphenol metabolism in an anoxic wetland soil. …

Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and …   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. …

… uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …

In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … and Mark Soghomonian share what it was like to take on one of these genomes.  …