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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … Quantitative and Systems Biology Mentor: Ernst Oberortner, Functional Genomics What effect has your summer internship …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … policy, engaging in interactions with the scientific community at large. … 2021 LBNL Director’s Award for …
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iPHoP: A Matchmaker for Phages and their Hosts
With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …
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Clarence Le
… researcher who identifies and analyzes novel clades of RNA viruses and determines novel viral gene functions that may impact hosts and host populations. …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … of a soil viral auxiliary metabolic gene product - a functional chitosanase., Nature Communications , 2023 Zhao … , 2022 Ke and Yoshikuni, Development of platforms for functional characterization and production of phenazines …
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Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake
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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
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Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean
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