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Learning to Look
… will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in the … to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … the entire cell.” The JGI team then used single cell genomics to analyze five of the bacterial cells on the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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What Happens Underground Influences Global Nutrient Cycles
… and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Building a Better Bean
… the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a … common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI User Executive Committee Expands
… on dead wood decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with … user program participation from researchers at non-R1 institutions, now defined as those that don’t spend …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The More the Merrier: Making the Case for Plant Pan-genomes
… said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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