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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
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Identifying the Microbial Cleanup Crew at a Superfund Site
… of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… soil carbon. The process to harvest energy-generating peat from these boggy wetlands produces an estimated 5% of annual … and have very little oxygen, which is tough on the type of microbes that break down plant matter. This means plants … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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A More Intuitive Phytozome Interface
… BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment▿ †
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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Deconvolute individual genomes from metagenome sequences through short read clustering
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