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Hiroshi Otani
… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, … 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus …
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Supercharging SIP in the Fungal Hyphosphere
… successfully automated aspects of a commonly-used process for studying microbial communities, with results published … isotope probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study of a … National Laboratory, have developed a semi-automated pipeline to apply robotics to the process. This automation …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require constant … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial … and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Population Level Analysis of Evolved Mutations Underlying Improvements in Plant Hemicellulose and Cellulose Fermentation by Clostridium phytofermentans
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … analysis of Big Data. The Research Team   … The research efforts of the group have concentrated in demonstrating the … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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A single-base resolution map of an archaeal transcriptome
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … “ Development of a multiplex genomic integration system for the selection of genes essential for specialized carbon … “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : “I got to learn about skills and …
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