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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … genomes. This technology has been further scaled to a multiplexed DAP-seq (multiDAP-seq) method allowing …
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A Model System for Perennial Grasses
… grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep … ever-increasing global population, drought is an obstacle toward improving crop yields for food and fuel use. In …
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … in the future? For other things than assembly size or gene count? (In the interactive tree) A: Sajeet is … data and metadata dumps available to download? A: We have multiple ways for programmatic access to MycoCosm. Please …
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Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways
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Revisiting a ‘simple’ fungal metabolic pathway reveals redundancy, complexity and diversity
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Genomic, Proteomic, and Biochemical Analysis of the Organohalide Respiratory Pathway in Desulfitobacterium dehalogenans
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich … products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of …
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