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Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide
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Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto …
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A One-Stop Shop for Analyzing Algal Genomes
… sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative …
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage …
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Metabolic Modeling of Fungi
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