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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley National Laboratory … that we studied are involved in transfer of the amine group, or the N group, to a variety of different molecules. …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've … is a wake-up call to revive the art of hands-on microbiology and experimental validation.  Microbes run the …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … methods. In building this program,  described in Plos Biology , the research team led by scientists at the U.S. … program generated many new high-confidence host predictions across a variety of ecosystems. In particular, it predicted …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … to both algae and land plants.  Within the biogeochemistry group, one of the four proposals selected is led by Eoin … in the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming …
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Partners
… The JGI leverages its existing partnerships and develops others providing … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome …
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, … gene regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Complete genome sequence of Leadbetterella byssophila type strain (4M15T)
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … a community-science program to collect samples from across the country to standardize the process. They noted … to study river microbiomes. To understand the microbiology of watershed systems, they utilized over 160 river …
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