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New Research Sheds Light on Diversity in the Deep Sea
… found at each site and the role they fulfilled suggest that specific environmental conditions — like temperature, pH … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows … — and green sulfur bacteria,  Chlorobium , blooms. The specific mixture of light and salinity in this portion of …
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The minimum information about a genome sequence (MIGS) specification
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … absence of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an … binding, we build a lot on DAP results. We also employ RNA-Seq and diverse in silico approaches for reconstructing …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… framework provided by these high quality reference genome sequences could help researchers better understand related … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For … Additionally, they want to expand their research into analyses of early-diverging land plants to further …
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Enhancers in Plant Development, Adaptation and Evolution
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