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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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FISH–FACS Enabled Targeted Recovery of Genomes from Uncultivated Environmental Microbial Populations
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their …
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A Single Genomic Region Controls Primocane Fruiting in Tetraploid Blackberry
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale … an unlimited number of proposals).  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … “Now with these new tools — metatranscriptomics, RNA sequencing of soil RNA — we can access — ‘What are they …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this … single cell capabilities range from traditional single cell sequencing and mini-metagenomics to more targeted …
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