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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the …
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Biases in genome reconstruction from metagenomic data
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Silver age of GOLD introduces new features
… matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated microbiome … standards freely available, and enabling large-scale comparative genomics analysis initiatives. GOLD not only … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National …
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An Integrative Computational Approach for Prioritization of Genomic Variants
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Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis
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JGI Scientists Pen Genome Watch Articles
… Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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Prepublication data sharing
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Clustering Categorical Data
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven … Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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